Changelog

Version 1.5.0 (2026-06-11)

Added support for Python 3.14
Fixed bed format output
Fixed extract command delimiter error

Version 1.4.2 (2025-03-19)

Fixed atr and gtr redundant motif

Version 1.4.1 (2024-12-05)

Added seed length to ATR object
Added support for Python 3.13
Changed the output column order of findatr
Fixed tandem repeat overlap
Fixed wraparound backtrace error

Version 1.3.3 (2024-07-20)

Fixed dna sequence uppercase
Updated command line parameters

Version 1.3.1 (2024-07-15)

Fixed minimum motif setting error
Fixed caluclation error of alignment

Version 1.3.0 (2024-02-21)

Optimized ATR finder extending identity
Added support for Python 3.12

Version 1.2.1 (2023-10-17)

Fixed STRFinder GC collection error

Version 1.2.0 (2023-10-15)

Fixed repeat search start position
Optimized atr finder algorithm

Version 1.1.0 (2023-09-16)

Added seq attribute to ATR and ETR object

Version 1.0.1 (2023-06-24)

Fixed command line interface errors

Version 1.0.0 (2023-06-05)

Changed the name from stria to pytrf
Optimized the command line interface
Used wraparound dynamic programming to identify approximate repeats

Version 0.1.5 (2023-05-05)

Fixed ci wheel build

Version 0.1.4 (2023-05-04)

Added support for Python 3.9-3.11
Updated the structure of objects

Version 0.1.3 (2021-05-31)

Fixed memory leak when iterating over ITRs

Version 0.1.2 (2021-05-21)

Fixed error caused by no boundary limit

Version 0.1.1 (2021-05-17)

Fixed ITRMiner parameter parser

Version 0.1.0 (2021-04-27)

released the first version